Daniele Di Bari
@dibari_92
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Work Experience
High School Teacher
Liceo Statale "A. Pieralli" Perugia• January 2022 - June 2022
Teaching mathematics, physics, and informatics to students aged 14 to 19 — 17h per week.
LTV - Long Term Visitor
Institut Laue-Langevin• November 2019 - November 2021
Research on protein dynamics in biological systems through the combination of molecular dynamics simulations and neutron scattering experiments.
International Internship
Laboratoire de Biochimie Théorique (CNRS UPR9080)• April 2018 - August 2018
Research on the atomistic details of the vibrational changes upon complexation of proteins with Molecular Dynamics simulations.
Assistant Professor
University of Perugia• October 2015 - October 2017
Support of the teaching activities for the course “Informatics Laboratory” held by prof. Marco Baioletti.
Education
University of Perugia
Physics, PhD• November 2018 - Present
My research activities focused on studying protein dynamics in different molecular environments, and the characterization of the dynamical state of the bacterial proteome at different temperatures. I combined coarse-grained simulations (Lattice Boltzmann Molecular Dynamics) with all-atoms Molecular Dynamics, to recreate - with a novel mesoscale approach - a representative portion of the E. coli proteome. The results of the simulations were compared to those of real experiments performed at the Institut Laue-Langevin (mainly neutron scattering experiments), and the data analysis was carried out in Python (packages: numpy, lmfit, scipy, mdanalysis, matplotlib, cffi, os, subprocess, selenium, pandas), and C++ (libraries: eigen, omp, fftw3, cmath). The simulations were carried out with the most powerful supercomputer in France, the TGCC Joliot-Curie CEA HPC (25 million CPU hours). The PhD was granted by the scholarship: Bando VINCI 2018, Università Italo-Francese (UIF/UFI). The thesis has been accepted, and the defense will take place in mid-July.
University Grenoble Alpes
Physics, PhD• November 2018 - Present
Double degree
University of Perugia
Physics, MS• October 2015 - September 2018
Thesis: An in-silico investigation of the configurational entropy upon MBP-Maltose complexation. Grade: 110/110.
University of Perugia
Physics, BS• October 2011 - May 2015
Thesis: Introduction to cosmic ray physics. Grade: 110/110.
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